These Carrot Cake Muffins with Cheesecake Filling are unbelievably moist and packed with cozy spices, featuring a smooth, rich cheesecake center and a wonderfully crisp streusel topping. I honestly think they might be my new favorite way to enjoy carrot cake. They are surprisingly simple to whip up and perfect for any time you need a little treat, whether it’s breakfast, a snack, or a satisfying dessert.

When I first started experimenting with using carrots in sweet baking, I had my doubts. It seemed a bit unusual, but the results were so delicious it opened up a whole new world of possibilities for me. And just like that, carrots made their delicious return to my kitchen. With spring just around the corner, there’s really no better time to bake with them again. So here we are, ready to talk about carrots and cake.
This time, we are making one of the most popular muffins you see everywhere online these days, Carrot Cake Muffins. The idea for these lovely muffins has been shared by so many talented bakers, and it quickly became a sensation. What truly makes them irresistible is that luscious cheesecake filling tucked inside, creating a soft, melt-in-your-mouth experience with every single bite. It’s the perfect creamy surprise inside the spiced cake.

Since many of my fellow baking enthusiasts have fallen in love with this idea, I knew it was time for me to give it a try too. But rather than simply follow a standard recipe, I wanted to add my own touch, something that makes my recipes unique. If you have ever browsed my muffin recipes, you might notice a theme. Almost every single one features a delicious streusel topping. My family absolutely adores those sweet, crumbly additions, so naturally, this tradition had to continue. My Carrot Cake Muffins needed that extra layer of texture, finished off with a simple sweet glaze drizzled over the top.
Making these muffins yourself is genuinely straightforward. You really shouldn’t run into any tricky spots or problems during the process. The steps are simple to follow, and the only decision you really need to make is how much of that creamy cheesecake filling you want in each muffin. I’ve experimented with adding just a little bit to packing them so full they practically melt from the filling when you bite in. It truly just comes down to what you prefer in your perfect muffin.
And after just about twenty minutes of baking, my kitchen fills up with the most amazing aroma of warm carrot cake. Suddenly, there’s a beautiful dessert or breakfast option sitting right on my table. These muffins are fantastic for Easter brunch or really any other occasion you can think of. I won’t go as far as saying they have completely replaced my all-time favorite muffins just yet, but my family was absolutely delighted. They disappeared so quickly that in a very short time, there was nothing left but a few crumbs on an empty plate. So if you consider yourself a carrot cake lover, this is definitely another recipe you simply must try.
How to Bake These Delicious Muffins
Creating these delightful Carrot Cake Muffins with Cheesecake Filling is a straightforward process broken down into simple steps. You will start by getting your oven ready and preparing your muffin pan.

- First, preheat your oven to 400°F (200°C). Line a standard size muffin pan with paper liners in each cup. Set this pan aside for when you are ready to fill it.
- Next, prepare the simple streusel topping. In a medium size bowl, measure out the flour, sugar, cinnamon, and salt needed for the streusel. Pour in the melted unsalted butter and use a fork to stir everything together until the mixture forms nice crumbles. Keep this bowl nearby.
- Now, make the creamy cream cheese filling. In another bowl, beat the softened cream cheese together with the vanilla extract and sugar until the mixture is smooth and creamy without any lumps. Set this bowl aside as well.
- To start the muffin batter, get a large mixing bowl ready. Whisk together all the dry ingredients listed for the muffins. Make sure they are well combined.
- In a separate, smaller bowl, whisk together the eggs, water, and vegetable oil until they are blended.
- Pour the whisked egg mixture into the bowl containing the dry ingredients. Then, gently fold in the freshly grated carrots. Stir everything well until all the ingredients are fully combined into a batter.
- Now it’s time to assemble your muffins. Spoon about 1 and a half to 2 tablespoons of the carrot batter into the bottom of each prepared muffin cup. Spread this layer out evenly to cover the base. Place about one heaping tablespoon of the cream cheese filling right on top of the batter layer in the center of each cup. Cover the filling with more carrot batter until each cup is about three quarters of the way full. Sprinkle the streusel topping generously over the top of each muffin.
- Place the filled muffin pan into your preheated oven and bake for about 20 minutes. To check if the cake part is done, insert a toothpick into a muffin, being careful to avoid hitting the cream cheese filling in the center. If the toothpick comes out clean, the cake is baked through. Carefully remove the pan from the oven.
- Let the muffins cool in the pan for about 10 minutes before gently moving them to a wire rack so they can cool completely.
- For the finishing touch, prepare the glaze. Combine the milk and powdered sugar in a small bowl. Stir them together very well using a spoon or whisk until the mixture is smooth and free of lumps.
- Once the muffins are completely cool, drizzle this smooth glaze generously over the top of each one just before you plan to serve them.

Common Questions About These Muffins
Here are answers to a few questions you might have about making these delightful carrot cake muffins.
Insert a toothpick into the cake portion of a muffin, avoiding the creamy center. If it comes out clean, the cake is done.
You can try reducing the sugar slightly in the muffin batter or streusel, but be aware it might affect the texture and moisture slightly. The cream cheese filling needs the sugar for proper texture.
Store them in an airtight container in the refrigerator because of the cream cheese filling. They should stay fresh for up to 3-4 days.
Yes, you can freeze them. It is best to freeze them unglazed. Once cooled, place them in a single layer in a freezer bag or container. Thaw in the refrigerator before adding the glaze.
Make sure your cream cheese is completely softened to room temperature before beating it with the sugar and vanilla. This helps ensure a smooth, creamy filling.
Yes, you can gently fold about half a cup of chopped nuts (like walnuts or pecans) or raisins into the muffin batter in step 6 if you like.
You can adjust the consistency of the glaze by adding a tiny bit more milk if it is too thick or a little more powdered sugar if it is too thin. Add just a small amount at a time until it is just right for drizzling.

[102]Carrot Cake Muffins with Cheesecake Filling
- Prep Time: 30 minutes
- Cook Time: 20 minutes
- Total Time: 50 minutes
- Yield: 18 muffins
- Category: Muffins
- Method: Oven
Description
These Carrot Cake Muffins with Cheesecake Filling are irresistibly moist muffins packed with warm spice, a smooth and creamy cheesecake center, and a delightful crunchy streusel topping, making them perfect for breakfast, a snack, or dessert!
Ingredients
For the Carrot Cake Muffins
- 2 ¼ cups (270g) all-purpose flour
- ½ cup (100g) granulated sugar
- ¼ cup (50g) light brown sugar, firmly packed
- 1 ½ teaspoons (7g) baking powder
- ¼ teaspoon (1g) baking soda
- 1 ½ teaspoons (4g) ground cinnamon
- ¾ teaspoon (2g) ground ginger
- ¾ teaspoon (5g) salt
- 2 large (100g) eggs
- ¾ cup (180ml) water
- ⅓ cup (80ml) vegetable oil
- 1 cup (110g) grated carrots, from about 2–3 medium carrots
For the Cream Cheese Filling
- 10 ounce (280g) cream cheese, softened
- ¼ cup + 1 Tablespoon (70g) granulated sugar
- ½ teaspoon (3ml) vanilla extract
For the Streusel Topping
- 1 cup (120g) all-purpose flour
- ⅔ cup (130g) granulated sugar
- ½ cup (110g) unsalted butter, melted
- 1 teaspoon (3g) cinnamon
- ¼ teaspoon (2g) salt
For the Glaze
- 1 Teaspoon (5ml) milk
- ¼ cup (60ml) powdered sugar
Instructions
- Start by heating your oven to 400°F (200°C). Prepare a standard size muffin pan by lining each cup with paper liners. Set this aside for later.
- Next, make the streusel topping. In a medium bowl, mix the flour, sugar, cinnamon, and salt for the streusel. Pour in the melted unsalted butter and stir it with a fork until the mixture forms crumbles. Set this aside.
- Prepare the cream cheese filling. Beat the softened cream cheese, vanilla extract, and sugar together until the mixture is smooth and creamy. Set this aside.
- To make the muffin batter, get a large mixing bowl. Whisk together the dry ingredients listed for the muffins.
- In a separate, smaller bowl, whisk the eggs, water, and vegetable oil.
- Add the whisked egg mixture into the bowl with the dry ingredients. Then gently fold in the grated carrots. Stir everything well to combine all the ingredients.
- Now assemble the muffins. Spoon about 1 1/2 to 2 tablespoons of carrot batter into the bottom of each prepared muffin cup. Spread this layer evenly to cover the base. Place about one heaping tablespoon of the cream cheese filling on top of the batter in each cup. Cover the filling with more carrot batter until each cup is about three-quarters full. Sprinkle the streusel topping generously over the top of each muffin.
- Place the pan in the preheated oven and bake for about 20 minutes. To check if they are done, insert a toothpick into the cake part of a muffin (be careful not to hit the cream cheese filling). The toothpick should come out clean. Remove the pan from the oven.
- Let the muffins cool in the pan for 10 minutes before moving them to a wire rack to cool completely.
- For the glaze, combine the milk and powdered sugar in a small bowl. Stir them together very well until smooth. Drizzle this glaze over the cooled muffins just before you serve them.
Notes
Special techniques or explanations: When checking if the muffins are baked through, insert a toothpick into the cake portion only, avoiding the cream cheese filling. A clean toothpick means the cake is done.
Slicing or serving suggestions: Allow the muffins to cool in the pan for 10 minutes before moving them to a rack. Ensure muffins are fully cooled before applying the glaze.
Nutrition
- Serving Size: 1 muffin
- Calories: 350
- Sugar: 28g
- Sodium: 180mg
- Fat: 20g
- Carbohydrates: 40g
- Fiber: 1g
- Protein: 4g
- Cholesterol: 50mg