Blueberry Pancake Zucchini Muffins (Healthy & Easy!)

These healthy blueberry zucchini muffins are truly a treasure, wonderfully moist and tender with sweet bursts of blueberry and a secret veggie addition that makes them extra special. I just know you’re going to fall in love with their incredible flavor and texture. They honestly remind me of the perfect blueberry pancake in muffin form, just healthier and portable. This recipe is straightforward, making it an easy baking project that’s perfect for weekend mornings or prepping snacks for the week ahead.

A stack of golden-brown blueberry zucchini muffins on a white marble tray, surrounded by fresh blueberries and a glass of milk.

What Makes These Muffins So Good

I can barely contain my excitement about these healthy blueberry zucchini muffins. I’ve been baking them for years now, and every time I make a batch, I’m reminded just how wonderful they are. They’re the kind of treat that feels indulgent but is secretly packed with good-for-you ingredients. It’s amazing how the simple addition of shredded zucchini can transform a muffin, adding incredible moisture and fiber without anyone even knowing it’s there. I’ve even gotten picky eaters to rave about these, and they had no idea they were eating a vegetable. That’s a win in my book. I’ve shared this recipe with so many friends and family members, and it always gets rave reviews. Baking with zucchini is one of my favorite kitchen tricks because it adds such a lovely moistness to baked goods, often letting you reduce the amount of added fat.

Key Items for Your Muffin Mixture

These healthy blueberry zucchini muffins are seriously pure gold in the world of simple baking. They hit all the right notes: perfectly moist texture, naturally sweetened flavor, and they cleverly sneak in a veggie. Here is a look at what you will need to bake these delightful treats:

  • The Base Flour: We build these muffins using whole wheat pastry flour. This type of flour gives them a tender crumb. White whole wheat flour is another excellent choice you can use here.
  • Zucchini Power: Shredded zucchini is our secret weapon for adding moisture to these fantastic muffins and including a hidden vegetable. Remember to firmly squeeze out any extra liquid from the shredded zucchini before you mix it into the batter. This step is important for getting the right consistency.
  • Natural Sweetness: We naturally sweeten these muffins using pure maple syrup. Alongside the syrup, we add cinnamon, vanilla extract, and almond extract. These extracts provide a wonderful flavor boost that makes the muffins taste truly special.
  • Baking Essentials: To make sure these muffins rise nicely and bake up properly, you will need baking soda and a touch of salt. These ingredients are crucial for the structure and overall texture.
  • Moisture Boosters: We also include a bit of olive oil, applesauce, and almond milk in the batter. These ingredients work together to ensure the muffins turn out incredibly moist and soft. You won’t find any dry muffins here.
  • Binding Agent: You will need just one large egg. The egg helps bind all the ingredients together, giving the muffins their structure and helping them hold their shape.
  • The Star Fruit: Of course, fresh or frozen blueberries are essential. They provide those delightful bursts of sweet, juicy flavor in every single bite. They are what truly make these blueberry zucchini muffins.
Golden-brown blueberry zucchini muffins with visible blueberries, arranged on a white plate atop a rustic wooden table, surrounded by scattered blueberries and a vintage fork.

Simple Swaps for Ingredients

While I always recommend sticking as closely to the original recipe as possible for the best outcome, sometimes you might need to make a substitution. Here are a few ingredient swaps you could consider for these muffins. I encourage you to give them a try if you need to, and let me know how they turn out.

  • For a Vegan Version: If you want to make these muffins suitable for a vegan diet, you can try swapping the regular egg for a flax egg. Making a flax egg is simple you just mix ground flaxseed with water and let it sit to thicken. I haven’t personally tested this specific swap in this recipe yet, so if you do try it, please share your results.
  • Going Gluten Free: To make gluten free blueberry zucchini muffins, I would suggest experimenting with different gluten free flour options. An all purpose gluten free flour blend could work, or perhaps chickpea flour or oat flour. You can even make your own oat flour by blending rolled oats. Please note that I haven’t tested this recipe with any gluten free substitutes myself, so I can’t guarantee the results will be identical, but these flours are often good starting points for gluten free baking.
  • Applesauce Alternatives: If you don’t have unsweetened applesauce on hand, I think one ripe banana that has been mashed well would likely be a good substitute. The banana would add sweetness and moisture similar to the applesauce. Another option could be using homemade apple butter if you happen to have some available.

Making These Muffins Your Own

Have some fun with this recipe and feel free to add your favorite mix-ins or toppings to customize your blueberry zucchini muffins. It is a great way to put your own spin on them. Here are a few ideas that I think would be absolutely delicious:

  • Try adding about half a cup of chopped walnuts for a bit of crunch and nutty flavor.
  • Chopped pecans are another fantastic option for adding a delightful texture. Use about half a cup.
  • For a bright citrus twist, stir in some orange zest or lemon zest into the batter. It adds a lovely fragrance and tang.
  • A sprinkle of poppy seeds can add a subtle crunch that is quite pleasant.
  • Consider adding a yummy lemon glaze drizzled over the cooled muffins. A simple glaze of powdered sugar mixed with lemon juice would be wonderful.
  • A drizzle of your favorite homemade nut butter on top of a warm muffin is also a simple yet incredibly satisfying addition.

Working With Frozen Blueberries

If you are using frozen blueberries instead of fresh ones, there are a couple of things I recommend doing to get the best results. Frozen berries can sometimes add too much moisture to your batter, which can affect the final texture of your muffins.

My first tip is to recommend thawing the frozen blueberries before you add them. Once they are thawed, gently drain off any excess liquid that has accumulated. This prevents the extra moisture from making your batter too wet.

Another helpful trick is to lightly toss the thawed and drained blueberries in a little bit of flour before folding them into the batter. This small step helps prevent the blueberries from sinking to the bottom of the muffins during baking and also helps keep their color from bleeding and turning your muffins blue.

A close-up of blueberry zucchini muffins on a white marble tray, with fresh blueberries scattered around.

Preparing Your Blueberry Zucchini Muffins

Making these healthy blueberry zucchini muffins is a straightforward process. Follow these simple steps to bake a delicious batch.

  1. First, you need to get your oven ready for baking. Set the temperature to 350 degrees F (175 degrees C). While the oven heats up, prepare a standard pan designed for baking 12 muffins. You can choose to line each cup with muffin liners or coat the inside of the pan with nonstick cooking spray. Using cooking spray is a good idea even if you use liners, as it provides extra insurance that the muffins will not stick to anything.
  2. Next, take a large mixing bowl and combine all of your dry ingredients. This includes the flour, the baking soda, the cinnamon, and the salt. Give them a light mix to ensure they are distributed evenly. Set this bowl aside for just a moment.
  3. Now, in a separate bowl, one that is medium sized works well, add all of your wet ingredients. Put in the shredded zucchini that you squeezed the moisture from, the maple syrup, the vanilla extract, the almond extract, the olive oil, the applesauce, the egg, and the milk. Mix these wet ingredients together thoroughly until they are fully combined into a smooth mixture. After the wet ingredients are mixed, add the dry ingredients from the large bowl into this wet mixture. Stir everything together gently just until the dry and wet ingredients are combined. It is important not to overmix the batter at this stage. Finally, carefully fold in the fresh or frozen blueberries you prepared.
  4. With the batter ready, divide it evenly among the twelve muffin cups in your prepared pan. Aim to fill each cup about three quarters of the way full. Place the pan in the preheated oven and bake the muffins for about 22 to 30 minutes. You can tell they are finished baking when you insert a toothpick into the center of one of the muffins and it comes out clean. Once baked, let the muffins cool down in the pan while it sits on a wire rack for approximately 10 minutes. After this initial cooling time in the pan, carefully remove the muffins from the pan and transfer them directly onto the wire rack. Let them finish cooling completely on the rack. Following this process should result in a perfect batch of 12 delicious muffins.

Helpful Notes When Baking With Zucchini

Baking with zucchini might seem a little unusual at first, but it is a wonderful way to add moisture and nutrition to your baked goods. Here are a few important tips to keep in mind specifically when you are baking with shredded zucchini to ensure your muffins turn out perfectly every time.

Stacked blueberry zucchini muffins on a white marble surface, surrounded by fresh blueberries and a cozy kitchen setting.
  • When you shred the zucchini, use the small side of your grater. This will produce very fine shreds of zucchini. Using the smaller holes ensures that the zucchini blends seamlessly into the batter and cooks down nicely. You won’t notice big pieces, so no one will even be able to tell there is a vegetable hidden in their tasty muffin.
  • It is absolutely crucial to squeeze out as much of the excess liquid from the shredded zucchini as possible. Zucchini contains a lot of water, and if you skip this step or do not squeeze enough, that extra moisture will make your muffin batter too wet. This can result in dense or gummy muffins instead of light and fluffy ones. You can wrap the shredded zucchini in paper towels or a clean kitchen towel and squeeze firmly over the sink.
  • Make sure you measure the amount of shredded zucchini called for in the recipe before you squeeze the moisture out. The recipe asks for a specific volume or weight of the shreds before they are reduced by squeezing. Squeezing removes a significant amount of water, changing the volume or weight. So, measure first, then squeeze.
  • If you find yourself with extra zucchini, or if you want to make baking even easier in the future, you can shred a larger amount and freeze it for later use. Simply shred it, squeeze out the moisture, and then store it in a freezer safe bag or container. This makes it super convenient to pull out just the right amount whenever you want to bake these muffins or any other recipe calling for shredded zucchini.
Golden-blueberry zucchini muffins stacked on a white marble board, with fresh blueberries and utensils nearby.

Keeping Your Muffins Fresh (Freezer Friendly)

Yes, you will be happy to know that these healthy blueberry zucchini muffins are incredibly freezer friendly. This makes them absolutely perfect for meal prep or for having a quick, healthy snack or breakfast option ready to go anytime you need it. Freezing muffins is a great way to make a batch and enjoy them over a longer period.

To freeze these muffins, first make sure they have cooled completely to room temperature. Then, wrap each individual muffin securely in a freezer safe bag or wrap. Alternatively, you can place all the cooled and wrapped muffins into a larger freezer bag or an airtight freezer container. This helps prevent freezer burn and keeps them tasting fresh.

When you are ready to enjoy a frozen muffin, there are a couple of ways to reheat them. You can simply grab one from the freezer and let it thaw at room temperature for an hour or two. If you are in a hurry and want a warm muffin, you can reheat it in the microwave for about 30 to 45 seconds, or until it is heated through. They taste just as delicious after being frozen and thawed.

A cooling rack filled with freshly baked blueberry zucchini muffins, accompanied by a bowl of blueberries and a pink napkin.

Common Questions About These Muffins

Got questions about making these healthy blueberry zucchini muffins? Here are some common inquiries and their answers to help you bake with confidence.

Can I use regular all purpose flour instead of whole wheat pastry flour?

You can likely use regular all purpose flour, but the texture might be slightly different. Whole wheat pastry flour or white whole wheat flour provide a tender crumb while keeping the muffin wholesome.

Do I have to squeeze the liquid out of the zucchini?

Yes, absolutely. This is a very important step. Zucchini holds a lot of water, and if you do not squeeze it out, your batter will be too wet, resulting in dense or gummy muffins.

Can I use frozen zucchini?

Yes, you can use frozen shredded zucchini. Just make sure to thaw it completely and squeeze out as much liquid as possible before adding it to the batter.

How should I store these muffins?

Store cooled muffins in an airtight container at room temperature for up to 3 days, or in the refrigerator for up to a week. They also freeze beautifully for longer storage.

Can I add other fruits besides blueberries?

Yes, feel free to experiment. Small diced apples, raspberries, or chopped strawberries would likely work well. Keep the total amount of fruit around 1 cup.

My muffins stuck to the liners, what happened?

This can happen sometimes. Make sure to let the muffins cool slightly in the pan before removing them. Also, spraying the inside of the muffin liners with cooking spray before adding the batter provides extra nonstick insurance.

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Golden-brown blueberry zucchini muffins with visible blueberries, arranged on a white plate atop a rustic wooden table, surrounded by scattered blueberries and a vintage fork.

Blueberry Pancake Zucchini Muffins (Healthy & Easy!)

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  • Author: Ryan Miller
  • Prep Time: 10 minutes
  • Cook Time: 20 minutes
  • Total Time: 30 minutes
  • Yield: 12 muffins
  • Category: Muffins
  • Method: Oven

Description

These Healthy Blueberry Zucchini Muffins are wonderfully moist and tender, packed with fresh blueberries and made extra wholesome with shredded zucchini and unsweetened applesauce. Naturally sweetened with pure maple syrup, they are an irresistible treat perfect for breakfast or a snack!


Ingredients

For the Muffins

  •  1 and ½ cups (180 grams) white whole wheat flour or whole wheat pastry flour
  •  1 teaspoon (5 grams) baking soda
  •  1 teaspoon (3 grams) ground cinnamon
  •  ¼ teaspoon (1.5 grams) fine sea salt
  •  1 cup (115 grams) shredded zucchini, excess moisture squeezed out with a paper towel
  • ½ cup (125 ml) pure maple syrup (or honey)
  •  ½ teaspoon (3 ml) pure vanilla extract
  •  ¼ teaspoon (1.5 ml) pure almond extract
  •  2 tablespoons (30 ml) olive oil (or melted butter)
  •  ⅓ cup (85 ml) unsweetened applesauce (or apple butter)
  •  1 large egg (55 grams)
  •  ¼ cup (65 ml) unsweetened almond milk (any milk works well)
  •  1 cup (150 grams) fresh or frozen blueberries

Instructions

Make the Muffin Batter

  1. Get the oven ready. Set the temperature to 350 degrees F (175 degrees C). Prepare a standard 12-cup muffin pan. You can coat it with nonstick cooking spray or use muffin liners. Using cooking spray helps ensure the muffins do not stick whether using liners or not.
  2. In a large mixing bowl, put together the dry ingredients. This includes the flour, baking soda, cinnamon, and salt. Mix them lightly. Set this bowl aside for now.
  3. In a different bowl, a medium size is good, add the wet ingredients. Put in the shredded zucchini, maple syrup, vanilla extract, almond extract, olive oil, applesauce, egg, and milk. Mix everything until it is fully combined. Now, add the dry ingredients from the large bowl into this wet mixture. Stir them together until they are just combined. Be careful not to overmix the batter. Gently fold in the fresh or frozen blueberries.
  4. Share the batter evenly among the twelve muffin cups in the prepared pan. Fill each cup about three-quarters of the way full. Bake the muffins for 22 to 30 minutes. You will know they are ready when a toothpick inserted into the middle of a muffin comes out clean. Let the muffins cool in the pan on a wire rack for 10 minutes. After that, remove the muffins from the pan and put them directly onto the wire rack to finish cooling completely. This recipe makes 12 muffins.

Notes

Here are some helpful ideas and suggestions.

  • Make it vegan Use a flax egg instead of a regular egg.
  • Make it gluten free I suggest trying all purpose gluten free flour, chickpea flour, or oat flour. Please note I have not tested this recipe with a gluten free substitute, so I cannot confirm they will work perfectly.
  • No applesauce on hand I believe one mashed banana would be a good replacement.

Nutrition

  • Serving Size: 1 muffin
  • Calories: 121 cal
  • Sugar: 11.2 g
  • Fat: 3.1 g
  • Carbohydrates: 21.9 g
  • Fiber: 2 g
  • Protein: 2.7 g

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