Bakery-Style Lemon Poppy Seed Muffins (Easy Recipe)

These lemon poppy seed muffins are incredibly bright and utterly delightful with their perfect balance of zesty lemon flavor, delicate poppy seeds, a sweet crunchy streusel topping, and a tangy citrus glaze. I think you’ll find yourself reaching for a second one before you know it. With a wonderful tender crumb and two amazing toppings, they make breakfast or snack time feel extra special and are surprisingly simple to make at home.

Bright yellow Lemon Poppy Seed Muffins drizzled with lemon glaze, surrounded by fresh lemons.

Why These Muffins Are So Wonderful

When it comes to homemade muffins, you want them to be truly special. These lemon poppy seed muffins deliver on every level, making them a favorite in my kitchen. Here are a few reasons why you’ll love them too.

  • Their texture is wonderfully soft and moist. Using sour cream in the batter is a fantastic trick for ensuring these delicious muffins stay extra moist. This results in a perfectly tender baked good every single time.
  • They burst with fresh lemon taste and a pleasant poppy seed crunch. Each muffin is packed full of vibrant lemon zest. This adds the best, most concentrated lemon flavor. Plenty of poppy seeds are also mixed in for a delightful little bit of crunch in every bite.
  • They boast those signature tall, domed muffin tops topped with crunchy streusel. The secret to their impressive height is letting the muffin batter rest for one full hour before you bake it. This resting time allows the baking powder to start working its magic ahead of time. The result is wonderfully fluffy muffins with beautiful, tall tops. They are also finished with the most delicious lemon streusel. This really makes these muffins stand out. A drizzle of tangy lemon icing completes the final product. This creates the absolute perfect lemon poppy seed muffin experience.
Golden-brown Lemon Poppy Seed Muffins topped with crumbly streusel, sitting in a muffin tin on a wooden surface.

Essential Ingredients for Baking

Creating these amazing lemon poppy seed muffins starts with a few simple, high quality ingredients. Using fresh components makes all the difference in the final flavor and texture.

Bright yellow Lemon Poppy Seed Muffins drizzled with lemon glaze, surrounded by fresh lemons.
  • All purpose flour: This type of flour provides these muffins with the best, tender crumb structure.
  • Baking powder: This leavening agent gives these muffins their lovely fluffy texture as they bake.
  • Salt: Just a touch of salt helps to bring out all the delicious flavors in the muffins.
  • Fresh lemons: You will use fresh lemon zest for the intensely flavorful batter. Fresh lemon juice is essential for whisking up the tangy lemon icing.
  • Poppy seeds: These add the perfect little bit of crunch throughout the muffins.
  • Unsalted butter: Using unsalted butter gives the muffins a rich flavor. This really cannot be replicated with vegetable oil.
  • Granulated white sugar: This sweetens the muffins beautifully. It also helps to add moisture to the batter for a tender result.
  • Eggs: Make sure your eggs are at room temperature before you start mixing the batter. This helps them incorporate smoothly.
  • Vanilla extract: A little vanilla adds a sweet, warm note to the batter that complements the lemon.
  • Sour cream: This ingredient is key to giving these muffins a super moist crumb. Just like the eggs, make sure it is at room temperature.
  • Whole milk: I strongly recommend using whole milk for the best texture and richness in these muffins. It should also be at room temperature.
  • Powdered sugar: This finely ground sugar is whisked with lemon juice to create the smooth, sweet lemon glaze.
Lemon Poppy Seed Muffins with a generous layer of crumbly streusel topping, served on a white plate.

Baking Process Step by Step

Making these delicious lemon poppy seed muffins involves a few simple stages. Follow these steps carefully to get the best results with those tall, beautiful tops and perfect texture.

Golden-brown Lemon Poppy Seed Muffins topped with creamy lemon glaze and sprinkled with poppy seeds.
  1. Start by whisking your dry ingredients together in a small bowl. This includes the all purpose flour, baking powder, and salt. Set this mixture aside for a moment while you work on the wet ingredients.
  2. Next, in a larger bowl, take a whisk and combine the melted butter, granulated white sugar, eggs, sour cream, milk, and vanilla extract. Whisk these ingredients together until everything looks smooth and well combined.
  3. Pour the dry ingredients you just set aside into the wet ingredients. Whisk these together only until they are just combined. It is very important not to overmix the batter at this stage.
  4. Gently add in the poppy seeds and the fresh lemon zest now. Use a rubber spatula to carefully fold them into the batter. Fold just until they are evenly distributed without overworking the mixture.
  5. Cover the bowl of batter tightly with plastic wrap. Let the batter sit at room temperature for a full hour to rest. This resting time is crucial for developing those tall, fluffy muffin tops.
  6. While the muffin batter is resting, you can prepare the streusel topping. In a medium bowl, whisk together the flour, sugar, and salt for the streusel. Add the cold, cubed unsalted butter and the lemon zest to these dry ingredients. Use your fingers or a fork to blend everything together until you get large, distinct crumbly clumps. Put the streusel mixture in the refrigerator to chill while you wait for the muffin batter to finish resting. Keeping it cold helps it hold its shape better during baking.
  7. Preheat your oven to 350 degrees F (175 degrees C). Line two standard muffin pans with a total of twelve paper liners. For best results and taller muffins, place the liners in every other muffin cup to give them space as they bake and rise. After the one hour rest period is finished, scoop the muffin batter carefully into the prepared muffin cups. It is important not to stir or mix the batter around after it has rested; just scoop it gently into each liner. Sprinkle the streusel topping generously over the top of the scooped batter in each cup. You might have a small amount of streusel left over, but just use what fits on top of each one for a lovely crunchy layer.
  8. Bake the muffins for about 22 to 25 minutes. They should turn golden brown around the edges and on top. A toothpick inserted carefully into the center of a muffin should come out clean when they are done baking. Let the muffins cool in their pans for ten minutes after baking. This allows them to set slightly before moving. Then, carefully transfer them to a wire rack so they can cool completely before you add the glaze. (A helpful note about baking all twelve muffins in a single standard 12-cup pan without spacing: keep in mind that the muffins will need about five extra minutes or so longer to bake through properly).
  9. While the muffins are cooling completely on the wire rack, prepare the lemon glaze. In a small bowl, whisk the powdered sugar and fresh lemon juice together until you have a smooth, pourable glaze consistency. Once the muffins have cooled completely, drizzle the lemon glaze generously over the top of each muffin. Let the glaze set for a few minutes before serving these delightful treats.
Lemon Poppy Seed Muffins with a generous layer of crumbly streusel topping, served on a white plate.

Helpful Baking Advice

Here are a few pro tips to ensure your lemon poppy seed muffins turn out perfectly every time you bake them. These small details can make a big difference in your final result.

Lemon Poppy Seed Muffins with lemon glaze drizzled over, placed on a white plate with fresh lemons in the background.
  • Measure your flour correctly. This is always my number one baking tip because it is so important. Do not ever scoop a measuring cup directly into your bag of flour. This method always leads to using too much flour. Instead, gently sprinkle spoonfuls of flour into your measuring cup. Then level off the excess flour carefully with the back of a knife. Or even better, weigh your flour using a kitchen scale for the most accurate results. Remember, one cup of all purpose flour equals about 125 grams.
  • Chill the streusel before you top the muffins. Once you have made your streusel mixture, place it in the refrigerator while your muffin batter rests. This helps to keep the streusel bits firmer. They will hold their shape better while the muffins bake in the hot oven.
  • Make sure all your wet ingredients are at room temperature. This includes the eggs, sour cream, and milk. Having these ingredients at room temperature ensures that they combine smoothly with the other ingredients. It also contributes to the best fluffy texture in your finished muffins. Cold wet ingredients can unfortunately lead to a denser muffin texture.
Golden Lemon Poppy Seed Muffins with visible black poppy seeds, arranged on a white plate.

Frequently Asked Questions

Here are answers to some common questions you might have about making these lemon poppy seed muffins.

Can I substitute Greek yogurt for the sour cream?

I have not personally tested this swap in this specific recipe. For the best results and the intended moist texture, I would suggest sticking to using sour cream as listed in the ingredients.

Is it really necessary to let the batter rest for a full hour

You do not absolutely have to let the batter rest if you are short on time. However, allowing the batter to rest for the hour before scooping it into the muffin liners makes a significant difference. This step allows the baking powder to get a head start on activating. This results in extra fluffy muffins with a notably taller, bakery style muffin top. If you choose not to wait the full hour, the muffins will still be great. They will just have a slightly smaller muffin top.

How should I store any leftover lemon muffins?

You should store any leftover muffins in an airtight container. Keep them at room temperature. They will stay fresh and delicious for up to three days this way.

Can I freeze these baked muffins?

Yes, you can freeze baked lemon poppy seed muffins. Allow them to cool completely first. Then wrap each muffin individually in plastic wrap. Place the wrapped muffins in a freezer safe bag or container. They can be frozen for up to two or three months. Thaw them at room temperature or gently warm them before serving.

What kind of milk is best to use?

I recommend using whole milk for the richest flavor and best texture. However, you can use 2 percent milk if that is what you have on hand. Using skim milk might affect the overall richness slightly.

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Bright yellow Lemon Poppy Seed Muffins drizzled with lemon glaze, surrounded by fresh lemons.

Bakery-Style Lemon Poppy Seed Muffins (Easy Recipe)

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  • Author: Ryan Miller
  • Prep Time: 20 minutes
  • Cook Time: 23 minutes
  • Total Time: 43 minutes
  • Yield: 12 muffins
  • Category: Muffins
  • Method: Oven

Description

These Lemon Poppy Seed Muffins are simply irresistible! They offer a delightful balance of bright lemon flavor and delicate poppy seeds with a sweet, crunchy streusel topping and a tangy citrus glaze!


Ingredients

  • 2 cups (250 grams) all-purpose flour
  • 1 tablespoon baking powder
  • ½ teaspoon salt
  • ½ cup (120 grams) melted unsalted butter
  • 1 cup (200 grams) granulated white sugar
  • 2 eggs, at room temperature
  • ½ cup (125 grams) sour cream, at room temperature
  • ½ cup (120 ml) whole milk, at room temperature
  • 1 teaspoon vanilla extract
  • 1 ½ tablespoons poppy seeds
  • 2 tablespoons (20 grams) lemon zest, from about 4 large lemons

For the Lemon Streusel

  • 1 cup (130 grams) all-purpose flour
  • ¾ cup (150 grams) sugar
  • ¼ teaspoon salt
  • 6 tablespoons (90 grams) cold unsalted butter, cut into small pieces
  • 1 teaspoon lemon zest, from about ½ large lemon

For the Lemon Glaze

  • 1 cup (130 grams) powdered sugar
  • 4 teaspoons lemon juice, from about ½ a large lemon

Instructions

For the Lemon Poppy Seed Muffins

  1. In a small bowl, whisk together the all-purpose flour, baking powder, and salt. Set this dry mixture aside for now.
  2. In a large bowl, whisk together the melted butter, granulated white sugar, eggs, sour cream, milk, and vanilla extract until smooth.
  3. Pour the dry ingredients you set aside into the wet ingredients. Whisk just until everything is combined; do not overmix.
  4. Add in the poppy seeds and lemon zest. Use a rubber spatula to gently fold them into the batter.
  5. Cover the bowl of batter tightly with plastic wrap. Let the batter rest at room temperature for one full hour before baking.

For the Lemon Streusel

  1. While the muffin batter is resting, prepare the streusel topping. In a medium bowl, whisk together the flour, sugar, and salt.
  2. Add the cold, cut-up butter and the lemon zest to the dry ingredients. Use your fingers or a fork to work everything together until large, crumbly clumps form.
  3. Place the streusel mixture into the refrigerator to chill while you wait for the muffin batter to finish resting.

Baking the Muffins

  1. Preheat your oven to 350 degrees F (175 degrees C).
  2. Line two standard muffin pans with a total of twelve paper liners. For best results, place liners in every other muffin cup to allow space for spreading. After the one hour rest period, scoop the muffin batter into the prepared muffin cups. Be careful not to stir or mix the batter after it has rested; just scoop it gently into each liner. Sprinkle the streusel topping generously over the top of the scooped batter in each cup. (You might have a small amount of streusel left over).
  3. Bake the muffins for 22 to 25 minutes. They should be golden brown and a toothpick inserted into the center should come out clean. Let the muffins cool in their pans for ten minutes. Then, carefully transfer them to a wire rack to cool completely before glazing. (A helpful note: If you choose to bake all twelve muffins in a single standard 12-cup pan without spacing, they may need an extra five minutes or so of baking time).

For the Lemon Glaze

  1. While the muffins are cooling on the wire rack, make the glaze. In a small bowl, whisk the powdered sugar and lemon juice together until you have a smooth, pourable glaze.
  2. Once the muffins have cooled completely, drizzle the lemon glaze over the top of each muffin. Let the glaze set for a few minutes before serving. Enjoy these delightful treats!

Notes

Storage: Store leftover muffins in an airtight container at room temperature for up to three days.

Pan Spacing: Baking muffins in spaced-out cups helps them rise taller and bake more evenly. If using one full pan, be sure to adjust the bake time as noted in the instructions.

Streusel Amount: The streusel recipe makes just enough to generously top twelve muffins. Don’t worry if you have a tiny bit left over.


Nutrition

  • Serving Size: 1 muffin
  • Calories: 400
  • Sugar: 40g
  • Sodium: 180mg
  • Fat: 17g
  • Carbohydrates: 56g
  • Fiber: 1g
  • Protein: 5g
  • Cholesterol: 50mg

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